PlantPromoterDB promoter information of J023078I22
Summary of Gene (J023078I22)
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Overview
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Focused view (chromosome 1: 26650650-26651849)
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Genome position
from initiation codon J013050G23 J013060F03 J013088A19 J013105M18 J013108D15 J013118M09 J023009J17 J023103F15 J023105B22 J033024C18 J033032N02 J033041E20 J033068L19 J033076E16 J033084J03 J033090A13 J033106C19 J033111H05 J033116N13 J033127C24 J033129M02 J033145J02 J043005F08 J043007L22 J043031E03 J043035J19 J053027K20 J065058I24 J065078A06 J065085E09 J065093L04 J065099H07 J065102D09 J065136J19 J065182P21 J065200F03 J090004E22 J090013K22 J090019A03 J090057B09 J090066F19 J090071M22 J090075E16 J090086D23 TSS from cDNA TSS information J023078I22 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J023078I22
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 26651589 | -61 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CATCCACC | + | 26651309 | 26651316 | -341 | -334 | |||
| OsREG515 | CATCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | TAATGGGCCCACTTG | + | 26651502 | 26651516 | -148 | -134 | |||
| OsREG610 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG489 | ATGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG478 | GGCCCACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG498 | CCCACTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||