Summary of Gene (J023081I22)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK099539 AK101873 AK106801 AK121758 AK121891 J013059H01 J013092F08 J013146J04 J023001K12 J023002H16 J023013B10 J023084K19 J023150E24 J033023B18 J033025F18 J033048P08 J033060M24 J033070G06 J033088P12 J033105C13 J043009N18 J065103G21 J075039H15 J090014K10 J090022N02 J090033F18 J090033I04 J090041F11 J090045P20 J090054B01 J090055M12 J090071K09 J090098O16 J090099P15 J100050I16 TSS from cDNA TSS information J023081I22 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 24412241 | -740 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CGCCTATAAATA | - | 24412267 | 24412278 | -766 | -777 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GACGGCCCGGATCCGACCCGC | - | 24412290 | 24412310 | -789 | -809 | |||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG633 | GGCCCGGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG588 | GATCCGAC | PPDB Motif | CCGAC  | PLACE Motif |   | ||||
OsREG552 | CGACCCGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTCCGTCCGATC | - | 24412322 | 24412333 | -821 | -832 | |||
OsREG623 | GTCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG561 | TCCGTCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | CCGTCCGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG484 | CGTCCGAT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG589 | GTCCGATC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCGGCCCGGGTGGGGCCCACGCCCAGAT | - | 24412344 | 24412371 | -843 | -870 | |||
OsREG568 | TCGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG539 | GGCCCGGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG528 | CGGGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG612 | GGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | GGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG602 | GCCCACGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG486 | GCCCAGAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CACGTCAC | - | 24412373 | 24412380 | -872 | -879 | |||
OsREG505 | CACGTCAC | PPDB Motif | ACGT  | PLACE Motif | TGAC  | ||||
REG | GGCCCCACACG | - | 24412454 | 24412464 | -953 | -963 | |||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG611 | GCCCCACA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG535 | CCCCACAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG526 | CCCACACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CACTGACAGGTGG | - | 24412480 | 24412492 | -979 | -991 | |||
OsREG510 | CACTGACA | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG453 | ACTGACAG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG551 | CTGACAGG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG501 | GACAGGTG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG436 | ACAGGTGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |