Promoter Summary of J023084K19

TSS information

Type	Sequence	TPM score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Position from initiation codon
			Strand	Position	Position
TSS clone peak	G	clone	-	24412241	-740

Core promoter information

Type	Sequence	Genome position			Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	CGCCTATAAATA	-	24412267	24412278	-766	-777
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Position from initiation codon
				Strand	Start	End	Start	End
REG		GACGGCCCGGATCCGACCCGC		-	24412290	24412310	-789	-809
	OsREG584	GACGGCCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG446	ACGGCCCG		PPDB Motif	ACGGGC		PLACE Motif
	OsREG544	CGGCCCGG		PPDB Motif			PLACE Motif
	OsREG633	GGCCCGGA		PPDB Motif			PLACE Motif
	OsREG588	GATCCGAC		PPDB Motif	CCGAC		PLACE Motif
	OsREG552	CGACCCGC		PPDB Motif			PLACE Motif
REG		GTCCGTCCGATC		-	24412322	24412333	-821	-832
	OsREG623	GTCCGTCC		PPDB Motif			PLACE Motif
	OsREG561	TCCGTCCG		PPDB Motif			PLACE Motif
	OsREG545	CCGTCCGA		PPDB Motif			PLACE Motif
	OsREG484	CGTCCGAT		PPDB Motif			PLACE Motif
	OsREG589	GTCCGATC		PPDB Motif			PLACE Motif
REG		TCGGCCCGGGTGGGGCCCACGCCCAGAT		-	24412344	24412371	-843	-870
	OsREG568	TCGGCCCG		PPDB Motif	ACGGGC		PLACE Motif
	OsREG544	CGGCCCGG		PPDB Motif			PLACE Motif
	OsREG539	GGCCCGGG		PPDB Motif			PLACE Motif
	OsREG528	CGGGTGGG		PPDB Motif	GCCCA		PLACE Motif
	OsREG612	GGTGGGGC		PPDB Motif			PLACE Motif
	OsREG631	GTGGGGCC		PPDB Motif			PLACE Motif
	OsREG641	TGGGGCCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG647	GGGGCCCA		PPDB Motif	GCCCA		PLACE Motif
	OsREG640	GGGCCCAC		PPDB Motif	GCCCA		PLACE Motif
	OsREG571	GGCCCACG		PPDB Motif	GCCCA		PLACE Motif
	OsREG602	GCCCACGC		PPDB Motif	GCCCA		PLACE Motif
	OsREG486	GCCCAGAT		PPDB Motif	GCCCA		PLACE Motif
REG		CACGTCAC		-	24412373	24412380	-872	-879
	OsREG505	CACGTCAC		PPDB Motif	ACGT		PLACE Motif	TGAC
REG		GGCCCCACACG		-	24412454	24412464	-953	-963
	OsREG631	GGCCCCAC		PPDB Motif			PLACE Motif
	OsREG611	GCCCCACA		PPDB Motif			PLACE Motif
	OsREG535	CCCCACAC		PPDB Motif			PLACE Motif
	OsREG526	CCCACACG		PPDB Motif	GCCCA		PLACE Motif
REG		CACTGACAGGTGG		-	24412480	24412492	-979	-991
	OsREG510	CACTGACA		PPDB Motif			PLACE Motif	TGAC
	OsREG453	ACTGACAG		PPDB Motif			PLACE Motif	TGAC
	OsREG551	CTGACAGG		PPDB Motif			PLACE Motif	TGAC
	OsREG501	GACAGGTG		PPDB Motif			PLACE Motif
	OsREG436	ACAGGTGG		PPDB Motif			PLACE Motif

Other Reliable Promoter Summary

TSS information

Type	Sequence	TPM score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Gene model
		Strand	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Gene model
				Strand	Start	End
REG		None	None			None