Summary of Gene (J023101H20)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-113-H04 AK060428 AK098877 AK098893 AK121587 D38231 J013001E12 J013001N15 J013098G22 J023004P15 J023013D12 J023014D09 J023020G09 J023034A19 J023050I11 J023079D13 J023091B11 J023099M03 J023106P14 J023111F19 J023132C22 J023139O03 J023146O10 J033022G16 J033030C10 J033032G18 J033034N09 J033037K24 J033038B22 J033061E06 J033065F08 J033065I24 J033069L01 J033086N21 J033102I06 J033111N07 J033113P12 J033118K11 J033125D08 J033129P22 J033131L12 J033139D08 J033141J08 J043024B14 J053048G19 J065023B15 J065082C15 J065087D24 J065122D11 J065128P13 J065135G03 J065149I19 J065154E16 J065156K21 J065166H09 J065169F24 J065194I16 J065213M20 J075020F19 J075051J16 J075093C18 J075119H02 J075120J11 J075173A15 J080302B05 J080304G10 J080305E13 J080308A02 J080310H10 J080315L11 J090005H15 J090021C24 J090025H24 J090025M11 J090026C22 J090027H15 J090034B17 J090045G11 J090048H02 J090051N04 J090052I06 J090053G09 J090054L17 J090060M22 J090075N17 J090079K13 J090086H08 J090094N20 J100021F03 J100031M01 J100033I18 J100034P07 J100043M16 J100046J12 J100055F09 J100057D19 J100060O10 J100064G09 J100065E24 J100076M10 J100077F24 J100080E12 J100089J04 TSS from cDNA TSS information J023101H20 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 30086646 | -97 |
TSS clone peak | G | clone | + | 30086651 | -92 |
TSS clone | C | clone | + | 30086674 | -69 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GGTATAAAAG | + | 30086615 | 30086624 | -128 | -119 |
Y Patch | TCTCTCCCC | + | 30086660 | 30086668 | -83 | -75 |
Y Patch | TCCTCCCC | + | 30086688 | 30086695 | -55 | -48 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAGGCCCATAC | + | 30086417 | 30086427 | -326 | -316 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG606 | GCCCATAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATGGGCTGC | + | 30086447 | 30086456 | -296 | -287 | |||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG591 | TGGGCTGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGATGGGCTTA | + | 30086475 | 30086485 | -268 | -258 | |||
OsREG608 | GGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | GATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG655 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCAGCCCATTT | + | 30086491 | 30086501 | -252 | -242 | |||
OsREG591 | GCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG422 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGACGGCCCAAAT | + | 30086506 | 30086518 | -237 | -225 | |||
OsREG624 | GGACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |