PlantPromoterDB promoter information of J023103J15
Summary of Gene (J023103J15)
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Overview
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Focused view (chromosome 5: 161536-162735)
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Genome position
from initiation codon TSS from cDNA TSS information J023103J15 5'->3' (+) Promoter sequence AK103317
J033125H15 J065021L01 J065029M01 J065089F17 J065112N04 J065163L03 J065175B04 J065192E02 J075046C20 J075192A01 J100018H13 J100067K20 J100080N03 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J023103J15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 163696 | -90 |
| TSS clone peak | G | clone | + | 163708 | -78 |
| TSS clone | A | clone | + | 163750 | -36 |
| TSS clone | G | clone | + | 163759 | -27 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGTGTGTG | + | 163644 | 163651 | -142 | -135 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||