Summary of Gene (J023103J15)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J023103J15 5'->3' (+) Promoter sequence AK103317
J033125H15 J065021L01 J065029M01 J065089F17 J065112N04 J065163L03 J065175B04 J065192E02 J075046C20 J075192A01 J100018H13 J100067K20 J100080N03 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 163696 | -90 |
TSS clone peak | G | clone | + | 163708 | -78 |
TSS clone | A | clone | + | 163750 | -36 |
TSS clone | G | clone | + | 163759 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGTGTGTG | + | 163644 | 163651 | -142 | -135 | |||
OsREG499 | GGTGTGTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 162782 | AK103317, J065175B04, AK103317, J033125H15, J075046C20, J075192A01, J100018H13, J100080N03, J065029M01, J100067K20, J065089F17, J065112N04, J065163L03, J065192E02, J065021L01 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGATGGGCTTG | - | 162825 | 162835 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG608 | GGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | GATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGGCCCATGT | - | 162844 | 162854 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG437 | GCCCATGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCTGATGGGC | - | 162867 | 162882 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG422 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCGCA | - | 162902 | 162909 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG643 | GGGCCGCA | PPDB Motif | GCCCA  | PLACE Motif |   |