Summary of Gene (J023103J15)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-046-E07 006-048-H01 006-051-D11 006-073-E11 006-080-H11 006-083-D01 006-085-F04 006-091-D12 006-101-A02 006-104-F07 006-107-D10 006-117-D06 AK061557 AK104195 AK104478 AK104627 AK104772 AK119201 J013027B22 J013055A01 J013098L03 J013102L10 J013120K16 J023003O11 J023041K07 J023055G17 J023079K07 J023090N20 J023108H02 J033082M02 J065141L15 J090005I09 J090030J04 J090081B19 J090081F21 J100019G08 TSS from cDNA TSS information J023103J15 5'->3' (+) Promoter sequence AK103317
J033125H15 J065021L01 J065029M01 J065089F17 J065112N04 J065163L03 J065175B04 J065192E02 J075046C20 J075192A01 J100018H13 J100067K20 J100080N03 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 163696 | -90 |
TSS clone peak | G | clone | + | 163708 | -78 |
TSS clone | A | clone | + | 163750 | -36 |
TSS clone | G | clone | + | 163759 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGTGTGTG | + | 163644 | 163651 | -142 | -135 | |||
OsREG499 | GGTGTGTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 162782 | AK103317, J065175B04, AK103317, J033125H15, J075046C20, J075192A01, J100018H13, J100080N03, J065029M01, J100067K20, J065089F17, J065112N04, J065163L03, J065192E02, J065021L01 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGATGGGCTTG | - | 162825 | 162835 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG608 | GGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | GATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGGCCCATGT | - | 162844 | 162854 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG437 | GCCCATGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCTGATGGGC | - | 162867 | 162882 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG422 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCGCA | - | 162902 | 162909 | AK103317, J033125H15, J065021L01, J065029M01, J065089F17, J065112N04, J065163L03, J065175B04, J065192E02, J075046C20, J075192A01, J100018H13, J100067K20, J100080N03 | ||||
OsREG643 | GGGCCGCA | PPDB Motif | GCCCA  | PLACE Motif |   |