PlantPromoterDB promoter information of J023103J15
Summary of Gene (J023103J15)
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Overview
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Focused view (chromosome 5: 163936-165135)
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Genome position
from initiation codon 006-046-E07 006-048-H01 006-051-D11 006-073-E11 006-080-H11 006-083-D01 006-085-F04 006-091-D12 006-101-A02 006-104-F07 006-107-D10 006-117-D06 AK061557 AK104195 AK104478 AK104627 AK104772 AK119201 J013027B22 J013055A01 J013098L03 J013102L10 J013120K16 J013135H04 J023003O11 J023041K07 J023055G17 J023079K07 J023090N20 J023108H02 J033082M02 J065141L15 J090005I09 J090030J04 J090081B19 J090081F21 J100019G08 TSS from cDNA TSS information J023103J15 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J023103J15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 163696 | -90 |
| TSS clone peak | G | clone | + | 163708 | -78 |
| TSS clone | A | clone | + | 163750 | -36 |
| TSS clone | G | clone | + | 163759 | -27 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGTGTGTG | + | 163644 | 163651 | -142 | -135 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||