Summary of Gene (J023105J21)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J023121E21 J075080H01 J075082K02 J075142H01 J100078A03 J100085B02 TSS from cDNA TSS information J023105J21 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGGTGGGCCCCACGGCCCG | - | 20781118 | 20781136 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG521 | CCACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
REG | CCCGGGCCCACCAGCCCAG | - | 20781140 | 20781158 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
OsREG539 | CCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG543 | CCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG512 | CAGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGACGGCT | - | 20781202 | 20781209 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
OsREG468 | GGACGGCT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCATCCA | - | 20781229 | 20781236 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   |