Summary of Gene (J023108I04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK122071 J033117J08 J065007O12 J065020K12 J065142D24 J065157K19 J080307H19 J080311D16 J080316C12 J080316E03 J100033K16 J100042J21 J100051E06 J100071E22 TSS from cDNA TSS information J023108I04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 26661547 | -88 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GAGGCCCAC | - | 26661587 | 26661595 | -128 | -136 | |||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTTTGGGCCCATCA | - | 26661621 | 26661634 | -162 | -175 | |||
OsREG592 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG607 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCAGCCCAATA | - | 26661646 | 26661656 | -187 | -197 | |||
OsREG591 | GCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | CAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG460 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG596 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCAGCCCAAAC | - | 26661668 | 26661678 | -209 | -219 | |||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | CAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG457 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCTGT | - | 26661688 | 26661698 | -229 | -239 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG460 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | TTGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG435 | TGGGCTGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATATGGGCTGG | - | 26661801 | 26661811 | -342 | -352 | |||
OsREG480 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG465 | TATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | TGGGCTGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |