Promoter Summary of J023121E18

TSS information

Type	Sequence	TPM score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Position from initiation codon
				Strand	Start	End	Start	End
REG		None	None			None

Other Reliable Promoter Summary

TSS information

Type	Sequence	TPM score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Gene model
			Strand	Position
TSS clone peak	A	clone	-	22259103	AK061870, AK067529, J013108E24, J075024P21, J023121M13, 015-095-H06, J080003E05, J080005E02, J080005O18, J080007L18, J080014B07, J080017H23, J080020I23, J080021E15, J080024H17, J080029P12, J080030A15, J080032I03, J080034E10, J080038I23, J080040B22, J080040M13, J080041E07, J080042H08, J080043H10, J080052C17, J080054J23, J080056A15, J080063J18, J080071B08, J080071M08, J080076F22, J080076N23, J080077P10, J080078A19, J080078H07, J080079G16, J080084N12, J080084N17, J080086H08, J080088M01, J080092F06, J080095C09, J023088C10, J043004F18, J100064C12, J080002B20, J080005A18, J080007B04, J080008C17, J080011I03, J080014B09, J080015A11, J080016B07, J080020G09, J080023O13, J080032P18, J080042C08, J080046J02, J080050D12, J080054A05, J080056F18, J080059P07, J080066F15, J080067G12, J080070G15, J080071N03, J080074C01, J080077F23, J080079N23, J080084L04, J080090M14, J080095B14, J080095F20, J080095H12, J080096H22, 012-029-E03, 011-069-B06, 016-014-H08, J013069F08, J043005J04, J090065G14, J100035M10, J100049C19, J100051K11, J013039D11, J033034I21, J033150M22, J100064F13, J100084H08, J065215B03, J090077H03, 011-074-D07, 015-070-C10, J013050K19, J013132D19, 011-025-B09, 013-093-E04, 016-089-A01, 006-081-F12, 011-003-H03, J065208C22, J090010O21, J090051I21, J033118N14, AK061870, J065102D15, J065200P03, AK106151, 012-050-F04, 012-072-D11, J065063C02, 006-117-A04, 016-056-E07, J090012K22, J043020E12, J023039B18, J075013N21, J075027L19, J075037F12, J075084P15, J075086M06, J075116A02, J075136P18, J075181A01, J075198O11, 015-089-A01, 006-114-A02

Core promoter information

Type	Sequence	Genome position			Gene model
		Strand	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	CTCCTCCT	-	22259146	22259153	006-081-F12, 006-114-A02, 006-117-A04, 011-003-H03, 011-025-B09, 011-069-B06, 011-074-D07, 012-029-E03, 012-050-F04, 012-072-D11, 013-093-E04, 015-070-C10, 015-089-A01, 015-095-H06, 016-014-H08, 016-056-E07, 016-089-A01, AK061870, AK067529, AK106151, J013039D11, J013050K19, J013069F08, J013108E24, J013132D19, J023039B18, J023088C10, J023121M13, J033034I21, J033118N14, J033150M22, J043004F18, J043005J04, J043020E12, J065063C02, J065102D15, J065200P03, J065208C22, J065215B03, J075013N21, J075024P21, J075027L19, J075037F12, J075084P15, J075086M06, J075116A02, J075136P18, J075181A01, J075198O11, J080002B20, J080003E05, J080005A18, J080005E02, J080005O18, J080007B04, J080007L18, J080008C17, J080011I03, J080014B07, J080014B09, J080015A11, J080016B07, J080017H23, J080020G09, J080020I23, J080021E15, J080023O13, J080024H17, J080029P12, J080030A15, J080032I03, J080032P18, J080034E10, J080038I23, J080040B22, J080040M13, J080041E07, J080042C08, J080042H08, J080043H10, J080046J02, J080050D12, J080052C17, J080054A05, J080054J23, J080056A15, J080056F18, J080059P07, J080063J18, J080066F15, J080067G12, J080070G15, J080071B08, J080071M08, J080071N03, J080074C01, J080076F22, J080076N23, J080077F23, J080077P10, J080078A19, J080078H07, J080079G16, J080079N23, J080084L04, J080084N12, J080084N17, J080086H08, J080088M01, J080090M14, J080092F06, J080095B14, J080095C09, J080095F20, J080095H12, J080096H22, J090010O21, J090012K22, J090051I21, J090065G14, J090077H03, J100035M10, J100049C19, J100051K11, J100064C12, J100064F13, J100084H08
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Gene model
				Strand	Start	End
REG		CCGAGCCGAGCCGCGTCGC		-	22259159	22259177	006-081-F12, 006-114-A02, 006-117-A04, 011-003-H03, 011-025-B09, 011-069-B06, 011-074-D07, 012-029-E03, 012-050-F04, 012-072-D11, 013-093-E04, 015-070-C10, 015-089-A01, 015-095-H06, 016-014-H08, 016-056-E07, 016-089-A01, AK061870, AK067529, AK106151, J013039D11, J013050K19, J013069F08, J013108E24, J013132D19, J023039B18, J023088C10, J023121M13, J033034I21, J033118N14, J033150M22, J043004F18, J043005J04, J043020E12, J065063C02, J065102D15, J065200P03, J065208C22, J065215B03, J075013N21, J075024P21, J075027L19, J075037F12, J075084P15, J075086M06, J075116A02, J075136P18, J075181A01, J075198O11, J080002B20, J080003E05, J080005A18, J080005E02, J080005O18, J080007B04, J080007L18, J080008C17, J080011I03, J080014B07, J080014B09, J080015A11, J080016B07, J080017H23, J080020G09, J080020I23, J080021E15, J080023O13, J080024H17, J080029P12, J080030A15, J080032I03, J080032P18, J080034E10, J080038I23, J080040B22, J080040M13, J080041E07, J080042C08, J080042H08, J080043H10, J080046J02, J080050D12, J080052C17, J080054A05, J080054J23, J080056A15, J080056F18, J080059P07, J080063J18, J080066F15, J080067G12, J080070G15, J080071B08, J080071M08, J080071N03, J080074C01, J080076F22, J080076N23, J080077F23, J080077P10, J080078A19, J080078H07, J080079G16, J080079N23, J080084L04, J080084N12, J080084N17, J080086H08, J080088M01, J080090M14, J080092F06, J080095B14, J080095C09, J080095F20, J080095H12, J080096H22, J090010O21, J090012K22, J090051I21, J090065G14, J090077H03, J100035M10, J100049C19, J100051K11, J100064C12, J100064F13, J100084H08
	OsREG540	CCGAGCCGAGCCG		PPDB Motif			PLACE Motif
	OsREG559	CGCGTCGC		PPDB Motif			PLACE Motif	CGACG
REG		GGACGCGT		-	22259309	22259316	006-081-F12, 006-114-A02, 006-117-A04, 011-003-H03, 011-025-B09, 011-069-B06, 011-074-D07, 012-029-E03, 012-050-F04, 012-072-D11, 013-093-E04, 015-070-C10, 015-089-A01, 015-095-H06, 016-014-H08, 016-056-E07, 016-089-A01, AK061870, AK067529, AK106151, J013039D11, J013050K19, J013069F08, J013108E24, J013132D19, J023039B18, J023088C10, J023121M13, J033034I21, J033118N14, J033150M22, J043004F18, J043005J04, J043020E12, J065063C02, J065102D15, J065200P03, J065208C22, J065215B03, J075013N21, J075024P21, J075027L19, J075037F12, J075084P15, J075086M06, J075116A02, J075136P18, J075181A01, J075198O11, J080002B20, J080003E05, J080005A18, J080005E02, J080005O18, J080007B04, J080007L18, J080008C17, J080011I03, J080014B07, J080014B09, J080015A11, J080016B07, J080017H23, J080020G09, J080020I23, J080021E15, J080023O13, J080024H17, J080029P12, J080030A15, J080032I03, J080032P18, J080034E10, J080038I23, J080040B22, J080040M13, J080041E07, J080042C08, J080042H08, J080043H10, J080046J02, J080050D12, J080052C17, J080054A05, J080054J23, J080056A15, J080056F18, J080059P07, J080063J18, J080066F15, J080067G12, J080070G15, J080071B08, J080071M08, J080071N03, J080074C01, J080076F22, J080076N23, J080077F23, J080077P10, J080078A19, J080078H07, J080079G16, J080079N23, J080084L04, J080084N12, J080084N17, J080086H08, J080088M01, J080090M14, J080092F06, J080095B14, J080095C09, J080095F20, J080095H12, J080096H22, J090010O21, J090012K22, J090051I21, J090065G14, J090077H03, J100035M10, J100049C19, J100051K11, J100064C12, J100064F13, J100084H08
	OsREG442	GGACGCGT		PPDB Motif			PLACE Motif