Summary of Gene (J023123P20)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK102124 J013129O22 J023022I24 J023037B18 J023062I07 J023120A15 J033068P09 J033084O13 J090091E20 TSS from cDNA TSS information J023123P20 5'->3' (+) Promoter sequence J065104O14
J065118J19 J065167I12 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 34823516 | -194 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCCCCCCCCCCCCCC | + | 34823489 | 34823504 | -221 | -206 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCGTCTC | + | 34823237 | 34823244 | -473 | -466 | |||
OsREG560 | CGCGTCTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TATTGGGCCAG | + | 34823251 | 34823261 | -459 | -449 | |||
OsREG596 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCGGCCCATCT | + | 34823277 | 34823287 | -433 | -423 | |||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCGTCGC | + | 34823325 | 34823332 | -385 | -378 | |||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | CGACACGTG | + | 34823357 | 34823365 | -353 | -345 | |||
OsREG452 | CGACACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 34823154 | J065167I12, J065104O14, J065118J19, J065167I12 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCTCGGCCCATGG | - | 34823211 | 34823223 | J065104O14, J065118J19, J065167I12 | ||||
OsREG635 | TCTCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG575 | CTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | GAGACGCG | - | 34823237 | 34823244 | J065104O14, J065118J19, J065167I12 | ||||
OsREG560 | GAGACGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTGGCCCAATA | - | 34823251 | 34823261 | J065104O14, J065118J19, J065167I12 | ||||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG596 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGATGGGCCGC | - | 34823277 | 34823287 | J065104O14, J065118J19, J065167I12 | ||||
OsREG456 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCGACGCG | - | 34823325 | 34823332 | J065104O14, J065118J19, J065167I12 | ||||
OsREG559 | GCGACGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | CACGTGTCG | - | 34823357 | 34823365 | J065104O14, J065118J19, J065167I12 | ||||
OsREG509 | CACGTGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG452 | ACGTGTCG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  |