PlantPromoterDB promoter information of J033023A15
Summary of Gene (J033023A15)
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Overview
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Focused view (chromosome 1: 33759300-33758101)
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Genome position
from initiation codon AB110193 AK067557 AK099338 AK103133 AK103586 AK104829 D14673 J013045H08 J013112H20 J013160H01 J023030P20 J023050D22 J023068A22 J023110C16 J033025N16 J033026K01 J033026M02 J033028M22 J033036D08 J033038A21 J033039M10 J033039P15 J033044D24 J033051F18 J033066A18 J033073G10 J033075B15 J033079I16 J033087C12 J033095C16 J033096E09 J033096J07 J033101B17 J033108F14 J033122E12 J033124G02 J033129K21 J033130O03 J033133B14 J033141B06 J033141O12 J090003F07 J090009P10 J090012D16 J090023K01 J090030J17 J090033G02 J090037I22 J090037P05 J090038A17 J090048K09 J090059P09 J090060E03 J090069N01 J090078C19 J090079K07 J090086I19 J090089P15 J090093D07 J090095H01 J100047J15 J100057J03 TSS from cDNA TSS information J033023A15 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033023A15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 33759167 | J090078C19, J090003F07, J090093D07, AK103133, J023110C16, J033028M22, J033044D24, J090033G02, J033095C16, AK104829, J090023K01, J090048K09, J100057J03, J090089P15, D14673, AB110193, 011-038-B09, J090095H01, J090038A17, J090009P10, J090037I22, J090069N01, J033038A21 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTCCTCC | - | 33759134 | 33759144 | 011-038-B09, AB110193, AK103133, AK104829, D14673, J023110C16, J033028M22, J033038A21, J033044D24, J033095C16, J090003F07, J090009P10, J090023K01, J090033G02, J090037I22, J090038A17, J090048K09, J090069N01, J090078C19, J090089P15, J090093D07, J090095H01, J100057J03 | |
| Y Patch | CCTTCCTCC | - | 33759170 | 33759178 | 011-038-B09, AB110193, AK103133, AK104829, D14673, J023110C16, J033028M22, J033038A21, J033044D24, J033095C16, J090003F07, J090009P10, J090023K01, J090033G02, J090037I22, J090038A17, J090048K09, J090069N01, J090078C19, J090089P15, J090093D07, J090095H01, J100057J03 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CTTGGGCCAC | - | 33759255 | 33759264 | 011-038-B09, AB110193, AK103133, AK104829, D14673, J023110C16, J033028M22, J033038A21, J033044D24, J033095C16, J090003F07, J090009P10, J090023K01, J090033G02, J090037I22, J090038A17, J090048K09, J090069N01, J090078C19, J090089P15, J090093D07, J090095H01, J100057J03 | ||||
| OsREG581 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG653 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||