PlantPromoterDB promoter information of J033023A15
Summary of Gene (J033023A15)
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Overview
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Focused view (chromosome 1: 33760650-33759451)
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Genome position
from initiation codon J033133B14 J100047J15 TSS from cDNA TSS information J033023A15 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033023A15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 33759536 | AK103586, J090012D16, J090030J17, J090078C19, J090003F07, J090093D07, AK103586, J033051F18, AK067557, J033025N16, J033026K01, AK099338, J033026M02, J033036D08, J023030P20, AK103133, J023110C16, J033028M22, J033044D24, J090033G02, J033095C16, AK104829, J090023K01, J090048K09, J100057J03, J090089P15, D14673, AB110193, 011-038-B09, J090095H01, J090038A17, J090009P10, J090037I22, J090069N01, J033038A21 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TGCCTATATAAAAA | - | 33759563 | 33759576 | 011-038-B09, AB110193, AK067557, AK099338, AK103133, AK103586, AK104829, D14673, J023030P20, J023110C16, J033025N16, J033026K01, J033026M02, J033028M22, J033036D08, J033038A21, J033044D24, J033051F18, J033095C16, J090003F07, J090009P10, J090012D16, J090023K01, J090030J17, J090033G02, J090037I22, J090038A17, J090048K09, J090069N01, J090078C19, J090089P15, J090093D07, J090095H01, J100057J03 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information