Summary of Gene (J033025C03)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033025C03 5'->3' (+) Promoter sequence J053047C05
J053047O14 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 14655991 | -87 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCCTCTCTCCTCTT | + | 14655981 | 14655995 | -97 | -83 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCGAGG | + | 14655725 | 14655732 | -353 | -346 | |||
OsREG549 | GGGCGAGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGTTGGGCCGAA | + | 14655839 | 14655850 | -239 | -228 | |||
OsREG479 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCAGCCCATTT | + | 14655863 | 14655874 | -215 | -204 | |||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG422 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAAGCCCAAACCGGCCCACCAC | + | 14655895 | 14655917 | -183 | -161 | |||
OsREG419 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG457 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG440 | ACCGGCCC | PPDB Motif | GCCCA, AACCG(G/A)  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | CGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |