PlantPromoterDB promoter information of J033027N17
Summary of Gene (J033027N17)
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Overview
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Focused view (chromosome 4: 35402279-35401080)
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Genome position
from initiation codon 006-021-B12 006-021-F10 006-026-C01 006-031-B06 006-038-H03 006-040-B07 006-058-C03 006-062-B02 006-067-B11 006-069-H12 006-072-D01 006-081-E05 006-086-B07 006-092-G07 006-095-G09 006-098-A06 006-099-G01 006-102-E01 006-103-E10 006-114-A05 006-115-B09 006-118-F06 006-119-E10 006-120-A01 AF039532 AK070446 AK104363 J013039E18 J013056F20 J013131C19 J013153O17 J023054G10 J023067E19 J065016D15 J065110L17 J065127H09 J065128G08 J065144I11 J065157E01 J075017K12 J075025L07 J075045F11 J075052C08 J075070M16 J075142H09 J080001L06 J080014O08 J080015D20 J080016M09 J080017L03 J080018B13 J080031O11 J080032P12 J080034G03 J080034G17 J080034K17 J080036K13 J080057I07 J080058N24 J080063M08 J080067C21 J080070D01 J080075H16 J080078F06 J080082L03 J080083D21 J080083F23 J080086F13 J080086N16 J080090C17 J080097I15 J080097N15 J100051G03 J100071H01 J100080G18 TSS from cDNA TSS information J033027N17 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033027N17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 35402005 | -126 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAACCC | - | 35402028 | 35402035 | -149 | -156 |
| Y Patch | TCTCCTCCTCCTCC | - | 35401969 | 35401982 | -90 | -103 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGCGAGG | - | 35402215 | 35402222 | -336 | -343 | |||
| OsREG549 | GGGCGAGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CACACACC | - | 35402273 | 35402280 | -394 | -401 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||