Summary of Gene (J033031H21)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK101230 J023019K03 J023054C15 J023080O05 J033132N09 TSS from cDNA TSS information J033031H21 5'->3' (+) Promoter sequence AK064210
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 38186825 | AK069425, AK101230, AK069425 |
TSS clone peak | C | clone | + | 38186881 | AK069425, AK101230, AK069425 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCTTCCTCTCCCCC | + | 38186832 | 38186846 | AK069425, AK101230 | |
Y Patch | CCCCTCCCC | + | 38186886 | 38186894 | AK069425, AK101230 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATCCGACG | + | 38186759 | 38186766 | AK069425, AK101230 | ||||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
REG | CGCGCGAC | + | 38186769 | 38186776 | AK069425, AK101230 | ||||
OsREG557 | CGCGCGAC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CCCACCAC | + | 38186813 | 38186820 | AK069425, AK101230 | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   |