PlantPromoterDB promoter information of J033031H21
Summary of Gene (J033031H21)
|
Overview
|
Focused view (chromosome 1: 38186687-38187886)
|
Genome position
from initiation codon AK101230 J023019K03 J023054C15 J023080O05 J033132N09 TSS from cDNA TSS information J033031H21 5'->3' (+) Promoter sequence AK064210
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
|
|
Promoter Summary of J033031H21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 38186825 | AK069425, AK101230, AK069425 |
| TSS clone peak | C | clone | + | 38186881 | AK069425, AK101230, AK069425 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCTTCCTCTCCCCC | + | 38186832 | 38186846 | AK069425, AK101230 | |
| Y Patch | CCCCTCCCC | + | 38186886 | 38186894 | AK069425, AK101230 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATCCGACG | + | 38186759 | 38186766 | AK069425, AK101230 | ||||
| OsREG483 | ATCCGACG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| REG | CGCGCGAC | + | 38186769 | 38186776 | AK069425, AK101230 | ||||
| OsREG557 | CGCGCGAC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | CCCACCAC | + | 38186813 | 38186820 | AK069425, AK101230 | ||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||