Summary of Gene (J033041B13)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033041B13 5'->3' (+) Promoter sequence Os06g0218900
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 6100062 | -84 |
TSS clone peak | G | clone | + | 6100065 | -81 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTATATATG | + | 6100028 | 6100036 | -118 | -110 |
Y Patch | CTCCTCCTCT | + | 6100103 | 6100112 | -43 | -34 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCAAAT | + | 6099787 | 6099794 | -359 | -352 | |||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CACACACC | + | 6099862 | 6099869 | -284 | -277 | |||
OsREG499 | CACACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCGGCCC | + | 6099871 | 6099878 | -275 | -268 | |||
OsREG615 | GCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |