PlantPromoterDB promoter information of J033042O12
Summary of Gene (J033042O12)
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Overview
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Focused view (chromosome 3: 4768635-4767436)
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Genome position
from initiation codon AK066502 J013074E12 J065081J17 J065101C20 J065167I16 TSS from cDNA TSS information J033042O12 5'->3' (-) Promoter sequence AK064747
AK105523 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033042O12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 4767961 | AK105523, AK105523, AK064747 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATTTGGGCCGGGC | + | 4767707 | 4767719 | AK064747, AK105523 | ||||
| OsREG493 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | TGGGCCGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG538 | GGGCCGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG614 | GGCCGGGC | PPDB Motif | PLACE Motif | ||||||
| REG | TATGGGCCTT | + | 4767734 | 4767743 | AK064747, AK105523 | ||||
| OsREG630 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG430 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | |||||