PlantPromoterDB promoter information of J033052H11
Summary of Gene (J033052H11)
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Overview
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Focused view (chromosome 4: 213769-212570)
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Genome position
from initiation codon 015-058-G03 AK060850 AK066032 J013046D12 J013088L18 J013093J06 J013111I01 J013120B15 J013149K17 J023010J08 J023034J10 J023055D05 J033023L03 J033025N21 J033026A19 J033026M14 J033046J22 J033058P05 J033064A11 J033067K11 J033076H02 J033094E04 J033106A02 J033108N14 J033114I06 J033118H18 J033148C05 J043010I24 J043037C07 J053025M02 J053026N08 J053027O14 J065038N11 J065219C03 J090011F14 J090027C03 J090067M19 J090069C17 J090070P21 J090075N11 J090095C22 J100027O14 J100055E01 TSS from cDNA TSS information J033052H11 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033052H11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 213394 | -625 |
| TSS clone peak | C | clone | - | 213357 | -588 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTCC | - | 213352 | 213361 | -583 | -592 |
| Y Patch | TCTTCCTCTT | - | 213378 | 213387 | -609 | -618 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCGAA | - | 213444 | 213455 | -675 | -686 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CAAGGCCCACA | - | 213464 | 213474 | -695 | -705 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG430 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG472 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCGCGCGC | - | 213557 | 213564 | -788 | -795 | |||
| OsREG617 | TCGCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||