PlantPromoterDB promoter information of J033064A11
Summary of Gene (J033064A11)
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Overview
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Focused view (chromosome 4: 215606-214407)
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Genome position
from initiation codon TSS from cDNA TSS information J033064A11 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033064A11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 213394 | -88 |
| TSS clone peak | C | clone | - | 213357 | -51 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTCC | - | 213352 | 213361 | -46 | -55 |
| Y Patch | TCTTCCTCTT | - | 213378 | 213387 | -72 | -81 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCGAA | - | 213444 | 213455 | -138 | -149 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CAAGGCCCACA | - | 213464 | 213474 | -158 | -168 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG430 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG472 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCGCGCGC | - | 213557 | 213564 | -251 | -258 | |||
| OsREG617 | TCGCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||