PlantPromoterDB promoter information of J033071D05
Summary of Gene (J033071D05)
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Overview
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Focused view (chromosome 9: 17307749-17308948)
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Genome position
from initiation codon AK065164 J013002C08 J013049P03 J013055J11 J013070P19 J013072C09 J013108I17 J013118L14 J013123A14 J013124L24 J013128P10 J013134H01 J013152O16 J013153N08 J013157H14 J013158P14 J023066A03 J023086N13 J023103G22 J023114B07 J033098F14 J033099H02 J043017M24 J090011H01 J090017C01 J090029F09 J090041K03 TSS from cDNA TSS information J033071D05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J033071D05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 17308629 | -120 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGGGGAG | + | 17308526 | 17308533 | -223 | -216 | |||
| OsREG574 | TGGGGGAG | PPDB Motif | PLACE Motif | ||||||
| REG | GTCCCACCAAC | + | 17308557 | 17308567 | -192 | -182 | |||
| OsREG651 | GTCCCACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG520 | CCACCAAC | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||