Summary of Gene (J033075K16)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK062095 AK101235 AK122025 J013022O19 J023045P05 J033031K01 J033034I09 J033041O04 J033071K03 J033097M01 J033099M22 J033108N15 J033121D18 J033125O06 J033139M16 J033145P18 J033149D05 TSS from cDNA TSS information J033075K16 5'->3' (+) Promoter sequence AK107286
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 778996 | -101 |
TSS clone peak | G | clone | + | 778999 | -98 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCCGATC | + | 778721 | 778728 | -376 | -369 | |||
OsREG589 | GTCCGATC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGTGGGCCAG | + | 778826 | 778836 | -271 | -261 | |||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTGGGCCGAAA | + | 778850 | 778861 | -247 | -236 | |||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | GTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG634 | GGCCGAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTATGGGCCCAACT | + | 778863 | 778876 | -234 | -221 | |||
OsREG605 | TTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | ATGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | GGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG479 | GCCCAACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTTGGGCCGGA | + | 778881 | 778892 | -216 | -205 | |||
OsREG493 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTTGGGCCTCCCATGGGCCAT | + | 778920 | 778941 | -177 | -156 | |||
OsREG493 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG525 | CCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG487 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |