Summary of Gene (J033079F01)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 011-038-H07 013-075-C09 015-049-F11 015-057-G02 015-092-F04 015-095-H02 015-097-B07 016-040-D02 AK070041 J013042K07 J013134H23 J013134J23 J023036N24 J023045D11 J023049C06 J023077E10 J023077F10 J023105N12 J033036O12 J033064P11 J033123M22 J033143E10 J075013D12 J090014D20 TSS from cDNA TSS information J033079F01 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 3727548 | -194 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTATAAA | + | 3727512 | 3727519 | -230 | -223 |
Y Patch | CCCCCCTC | + | 3727501 | 3727508 | -241 | -234 |
Y Patch | CCTCCCTCCTCC | + | 3727525 | 3727536 | -217 | -206 |
Y Patch | TCTTCCTCTC | + | 3727575 | 3727584 | -167 | -158 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCACCT | + | 3727266 | 3727273 | -476 | -469 | |||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCCCCAC | + | 3727291 | 3727298 | -451 | -444 | |||
OsREG613 | GCCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCGTGGGCCCACCAC | + | 3727356 | 3727370 | -386 | -372 | |||
OsREG547 | CCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCACCTG | + | 3727420 | 3727427 | -322 | -315 | |||
OsREG514 | CCCACCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATCTGGGCCCCACGCCTCCCGGCCCCACA | + | 3727444 | 3727472 | -298 | -270 | |||
OsREG486 | ATCTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG579 | CTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG503 | CACGCCTC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG611 | GCCCCACA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCGACGCG | + | 3727478 | 3727485 | -264 | -257 | |||
OsREG559 | GCGACGCG | PPDB Motif |   | PLACE Motif | CGACG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |