Summary of Gene (J033084D13)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK061265 J075055O03 J075094D18 J075095J22 J075130H12 J075153E03 J100056D09 TSS from cDNA TSS information J033084D13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 37354865 | -1 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCTCGGC | - | 37354905 | 37354912 | -41 | -48 | |||
OsREG485 | ATCTCGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCATGGGCCAGA | - | 37355043 | 37355054 | -179 | -190 | |||
OsREG525 | CCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |