PlantPromoterDB promoter information of J033084D13
Summary of Gene (J033084D13)
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Overview
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Focused view (chromosome 1: 37358164-37356965)
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Genome position
from initiation codon AK061265 J075055O03 J075094D18 J075095J22 J075130H12 J075153E03 J100056D09 TSS from cDNA TSS information J033084D13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033084D13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 37354865 | -1 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCTCGGC | - | 37354905 | 37354912 | -41 | -48 | |||
| OsREG485 | ATCTCGGC | PPDB Motif | PLACE Motif | ||||||
| REG | CCATGGGCCAGA | - | 37355043 | 37355054 | -179 | -190 | |||
| OsREG525 | CCATGGGC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG488 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG577 | TGGGCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG638 | GGGCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||