PlantPromoterDB promoter information of J033086H03
Summary of Gene (J033086H03)
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Overview
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Focused view (chromosome 1: 30249972-30248773)
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Genome position
from initiation codon J033060J20 J033117B10 J080027C22 J080062G19 J080065M03 J100068P17 TSS from cDNA TSS information J033086H03 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033086H03
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 30252021 | -49 |
| TSS clone peak | G | clone | - | 30251973 | -1 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATACCGC | - | 30252044 | 30252051 | -72 | -79 |
| Y Patch | CTCCTCTCCT | - | 30251927 | 30251936 | 45 | 36 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTGTGGCCCACT | - | 30252123 | 30252135 | -151 | -163 | |||
| OsREG573 | CGTGTGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG653 | GTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | TGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG478 | GGCCCACT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CACACACC | - | 30252188 | 30252195 | -216 | -223 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||