PlantPromoterDB promoter information of J033087E11
Summary of Gene (J033087E11)
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Overview
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Focused view (chromosome 6: 1359440-1360639)
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Genome position
from initiation codon AK102200 J033030E04 J033058K06 J033060O13 J033068B04 J033113N12 J065110P15 J075174B01 TSS from cDNA TSS information J033087E11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J033087E11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 1360369 | -171 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGCTATATAA | + | 1360332 | 1360341 | -208 | -199 |
| Y Patch | TCTCTCCCTCCCTC | + | 1360370 | 1360383 | -170 | -157 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGGCCCAGGGCCGTC | + | 1360088 | 1360103 | -452 | -437 | |||
| OsREG660 | TTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG578 | TGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG550 | GGCCCAGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG584 | GGGCCGTC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGGGAC | + | 1360142 | 1360149 | -398 | -391 | |||
| OsREG651 | GGTGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | GCCCCACC | + | 1360169 | 1360176 | -371 | -364 | |||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||