PlantPromoterDB promoter information of J033099H08
Summary of Gene (J033099H08)
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Overview
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Focused view (chromosome 4: 25322805-25324004)
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Genome position
from initiation codon TSS from cDNA TSS information J033099H08 5'->3' (+) Promoter sequence 016-060-B03 AK059661 AK121011 J065156B08 J090014H15 J090030D11 J090045N13 J090087H05 Os04g0498750 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J033099H08
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 25323200 | AK059661, AK121011, AK059661 |
| TSS clone peak | A | clone | - | 25323115 | AK059661, AK121011, AK059661 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AGCCCATTA | - | 25323434 | 25323442 | AK059661, AK121011 | ||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG610 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||