Summary of Gene (J033099K13)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033099K13 5'->3' (-) Promoter sequence Os08g0549400 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 27656600 | -46 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTCTCTCCTCCTCCC | - | 27656611 | 27656627 | -57 | -73 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCCACGTGGGCCCCACC | - | 27656695 | 27656712 | -141 | -158 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG507 | GCCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCGGCCCG | - | 27656728 | 27656735 | -174 | -181 | |||
OsREG568 | TCGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
REG | AAACGGCCCATCC | - | 27656742 | 27656754 | -188 | -200 | |||
OsREG420 | AAACGGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
OsREG423 | AACGGCCC | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCGGA | - | 27656759 | 27656766 | -205 | -212 | |||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCAGCCCACCAAC | - | 27656772 | 27656784 | -218 | -230 | |||
OsREG657 | TCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG462 | AGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CATGGGCCGGA | - | 27656861 | 27656871 | -307 | -317 | |||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |