PlantPromoterDB promoter information of J033109D16
Summary of Gene (J033109D16)
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Overview
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Focused view (chromosome 5: 177147-175948)
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Genome position
from initiation codon AK102584 J023072P09 J023086H04 J023113D23 J023132I15 J023143B12 J033022A03 J033030J18 J033069M16 J033098E05 J033108D18 J033120C08 J033148E08 J043024F20 J065048K08 J065132K01 J065138B08 J065158D01 J100051E02 TSS from cDNA TSS information J033109D16 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033109D16
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 175295 | -748 |
| TSS clone peak | G | clone | - | 175291 | -744 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGCCCAATA | - | 175333 | 175344 | -786 | -797 | |||
| OsREG419 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG421 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG426 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG460 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG596 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGGCCCAAA | - | 175351 | 175360 | -804 | -813 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||