Summary of Gene (J033111O15)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033111O15 5'->3' (-) Promoter sequence 004-010-C07
009-111-A08 011-046-F10 AK066894 AK067122 AK102868 J013089O21 J033072D17 J033095M14 J033111N23 J043024M17 J065176I24 J090035C05 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | C | clone | + | 11675817 | AK102868, 004-010-C07, AK066894, 011-046-F10, J013089O21, 009-111-A08, J065176I24, J033095M14, AK067122, J090035C05, J033072D17, J043024M17, AK102868, J033111N23 |
TSS clone peak | A | clone | + | 11675904 | AK102868, 004-010-C07, AK066894, 011-046-F10, J013089O21, 009-111-A08, J065176I24, J033095M14, AK067122, J090035C05, J033072D17, J043024M17, AK102868, J033111N23 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCTCTCT | + | 11675836 | 11675843 | 004-010-C07, 009-111-A08, 011-046-F10, AK066894, AK067122, AK102868, J013089O21, J033072D17, J033095M14, J033111N23, J043024M17, J065176I24, J090035C05 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCCGTCCACGTGTCC | + | 11675688 | 11675703 | 004-010-C07, 009-111-A08, 011-046-F10, AK066894, AK067122, AK102868, J013089O21, J033072D17, J033095M14, J033111N23, J043024M17, J065176I24, J090035C05 | ||||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG434 | CCACGTGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG509 | CACGTGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG451 | ACGTGTCC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CGTTGGAT | + | 11675735 | 11675742 | 004-010-C07, 009-111-A08, 011-046-F10, AK066894, AK067122, AK102868, J013089O21, J033072D17, J033095M14, J033111N23, J043024M17, J065176I24, J090035C05 | ||||
OsREG481 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | AGCCCATT | + | 11675802 | 11675809 | 004-010-C07, 009-111-A08, 011-046-F10, AK066894, AK067122, AK102868, J013089O21, J033072D17, J033095M14, J033111N23, J043024M17, J065176I24, J090035C05 | ||||
OsREG432 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   |