PlantPromoterDB promoter information of J033111O15
Summary of Gene (J033111O15)
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Overview
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Focused view (chromosome 8: 11677050-11675851)
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Genome position
from initiation codon TSS from cDNA TSS information J033111O15 5'->3' (-) Promoter sequence 004-010-C07
009-111-A08 011-046-F10 AK066894 AK067122 AK102868 J013089O21 J033072D17 J033095M14 J033111N23 J043024M17 J065176I24 J090035C05 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033111O15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 11675904 | AK102868, 004-010-C07, AK066894, 011-046-F10, J013089O21, 009-111-A08, J065176I24, J033095M14, AK067122, J090035C05, J033072D17, J043024M17, AK102868, J033111N23 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||