PlantPromoterDB promoter information of J033122J01
Summary of Gene (J033122J01)
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Overview
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Focused view (chromosome 9: 15666936-15665737)
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Genome position
from initiation codon TSS from cDNA TSS information J033122J01 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J033122J01
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 15664427 | -41 |
| TSS clone peak | A | clone | - | 15664424 | -38 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCCGTCC | - | 15664515 | 15664522 | -129 | -136 | |||
| OsREG623 | GTCCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCACTCC | - | 15664556 | 15664563 | -170 | -177 | |||
| OsREG532 | CCCACTCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCCCGCGCCCACACACC | - | 15664593 | 15664610 | -207 | -224 | |||
| OsREG537 | CCCCCGCG | PPDB Motif | PLACE Motif | ||||||
| OsREG598 | GCCCACAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
| REG | CATCCACC | - | 15664634 | 15664641 | -248 | -255 | |||
| OsREG515 | CATCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCACCGCAC | - | 15664656 | 15664665 | -270 | -279 | |||
| OsREG554 | CGCACCGC | PPDB Motif | PLACE Motif | ||||||
| OsREG500 | CACCGCAC | PPDB Motif | PLACE Motif | ||||||
| REG | CTCGCGCGC | - | 15664685 | 15664693 | -299 | -307 | |||
| OsREG558 | CTCGCGCG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| OsREG617 | TCGCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||