Summary of Gene (J033122J01)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033122J01 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 15664427 | -41 |
TSS clone peak | A | clone | - | 15664424 | -38 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCCGTCC | - | 15664515 | 15664522 | -129 | -136 | |||
OsREG623 | GTCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCACTCC | - | 15664556 | 15664563 | -170 | -177 | |||
OsREG532 | CCCACTCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCCCGCGCCCACACACC | - | 15664593 | 15664610 | -207 | -224 | |||
OsREG537 | CCCCCGCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG598 | GCCCACAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG499 | CACACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CATCCACC | - | 15664634 | 15664641 | -248 | -255 | |||
OsREG515 | CATCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCACCGCAC | - | 15664656 | 15664665 | -270 | -279 | |||
OsREG554 | CGCACCGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG500 | CACCGCAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTCGCGCGC | - | 15664685 | 15664693 | -299 | -307 | |||
OsREG558 | CTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
OsREG617 | TCGCGCGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |