Summary of Gene (J033128I12)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK068579 AK101565 J013023M11 J013055A13 J013071H02 J013122G19 J013157C11 J013170N16 J043013F24 J065176P22 J065193N19 J090055C15 J090058C22 J090077L18 J090086C04 J090095D03 J100040K04 J100040M11 TSS from cDNA TSS information J033128I12 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 20152021 | -125 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCCGACGG | - | 20152100 | 20152108 | -204 | -212 | |||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG546 | TCCGACGG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
REG | GAGGCGTGGA | - | 20152139 | 20152148 | -243 | -252 | |||
OsREG503 | GAGGCGTG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG636 | GGCGTGGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |