Summary of Gene (J033148H23)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J033148H23 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 21481626 | -256 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCTCCC | - | 21481590 | 21481599 | -220 | -229 |
Y Patch | TTCCTCCCTC | - | 21481614 | 21481623 | -244 | -253 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCCACCAC | - | 21481684 | 21481693 | -314 | -323 | |||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGTGGGGCC | - | 21481716 | 21481724 | -346 | -354 | |||
OsREG612 | GGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGGGGC | - | 21481740 | 21481747 | -370 | -377 | |||
OsREG612 | GGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGTGGACC | - | 21481760 | 21481767 | -390 | -397 | |||
OsREG570 | CGTGGACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCTGGCCCCACCTGTCAGTG | - | 21481897 | 21481916 | -527 | -546 | |||
OsREG638 | TCTGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG514 | CCCACCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG436 | CCACCTGT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG501 | CACCTGTC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG551 | CCTGTCAG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG453 | CTGTCAGT | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |