PlantPromoterDB promoter information of J043020A13
Summary of Gene (J043020A13)
|
Overview
|
Focused view (chromosome 3: 28935244-28934045)
|
Genome position
from initiation codon AK065161 AK067813 J013002C04 J013035M07 J013049B10 J013065F11 J013072K18 J013073P08 J013098F08 J013154M13 J023001H02 J023003D16 J023014P17 J023036A22 J023038N01 J023042E11 J023058O05 J023084D05 J023088O17 J023138O11 J023147A10 J033029G18 J033031N13 J033090D09 J033091I06 J033096B20 J033101A19 J033135D03 J043001L13 J053071K24 J053092L14 J053099F19 J065009P22 J065046A22 J065099K22 J065112O22 J065119K11 J065212B11 J090022A11 J090054F15 J090076B20 J090099M22 J100032L01 J100065H13 TSS from cDNA TSS information J043020A13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of J043020A13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 28934508 | -764 |
| TSS clone peak | G | clone | - | 28934482 | -738 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCCTCTCTCTCC | - | 28934434 | 28934448 | -690 | -704 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCGTGGGCCAC | - | 28934776 | 28934787 | -1032 | -1043 | |||
| OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC | PLACE Motif | |||||
| OsREG547 | CCGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG571 | CGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | GTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG653 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGTGTGGGCCGTGTGGC | - | 28934789 | 28934807 | -1045 | -1063 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
| OsREG598 | GTGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | TGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | GTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG573 | CGTGTGGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||