Summary of Gene (J043020A13)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J043020A13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 28934508 | -764 |
TSS clone peak | G | clone | - | 28934482 | -738 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTCCTCTCTCTCC | - | 28934434 | 28934448 | -690 | -704 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCGTGGGCCAC | - | 28934776 | 28934787 | -1032 | -1043 | |||
OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG547 | CCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG653 | TGGGCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGTGTGTGGGCCGTGTGGC | - | 28934789 | 28934807 | -1045 | -1063 | |||
OsREG499 | GGTGTGTG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG598 | GTGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | GTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG504 | GGGCCGTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG573 | CGTGTGGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |