PlantPromoterDB promoter information of J043020L13
Summary of Gene (J043020L13)
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Overview
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Focused view (chromosome 5: 858019-856820)
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Genome position
from initiation codon 006-064-F09 006-066-C04 006-082-A03 006-092-G06 006-102-F09 AB037970 AK061836 AK070895 AY074786 J013022K21 J013154A03 J023074C02 J023091I19 J023135M05 J065027L11 J065065A08 J065120A08 J065174A05 J065184O22 J065191D07 J065209D04 J075014F11 J075036D03 J075157D23 J080007F15 J080008N12 J080010F22 J080011C19 J080011F12 J080012E11 J080015B12 J080015O16 J080016G24 J080016K13 J080018A02 J080018H03 J080022M01 J080023D20 J080023I01 J080023J05 J080024A09 J080024I09 J080025A10 J080025G04 J080027D21 J080029M05 J080030J01 J080034D10 J080036F18 J080038N11 J080039B07 J080039E01 J080039K11 J080040B09 J080040G11 J080041H08 J080041H19 J080041O20 J080042C15 J080043C16 J080043F18 J080044B17 J080044N10 J080044O07 J080045H15 J080045I03 J080046A05 J080048I06 J080049L04 J080049M09 J080050G11 J080051G20 J080053C09 J080053I05 J080053P18 J080054K10 J080054P14 J080057L05 J080062K11 J080063C19 J080065B03 J080066E15 J080066H05 J080066I05 J080068O11 J080070L22 J080071I12 J080071N20 J080072D10 J080072I10 J080074G03 J080076E23 J080076N03 J080077N23 J080084B13 J080084F07 J080085J15 J080085P20 J080090F21 J080093H16 J080093J01 J080093L04 J080097E24 J090012G04 J090054K05 TSS from cDNA TSS information J043020L13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J043020L13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||