PlantPromoterDB promoter information of J043024M17
Summary of Gene (J043024M17)
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Overview
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Focused view (chromosome 8: 11673495-11674694)
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Genome position
from initiation codon TSS from cDNA TSS information J043024M17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J043024M17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 11675817 | -228 |
| TSS clone peak | A | clone | + | 11675904 | -141 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCTCTCT | + | 11675836 | 11675843 | -209 | -202 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGTCCACGTGTCC | + | 11675688 | 11675703 | -357 | -342 | |||
| OsREG624 | GGCCGTCC | PPDB Motif | PLACE Motif | ||||||
| OsREG434 | CCACGTGT | PPDB Motif | ACGT | PLACE Motif | |||||
| OsREG509 | CACGTGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG451 | ACGTGTCC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | CGTTGGAT | + | 11675735 | 11675742 | -310 | -303 | |||
| OsREG481 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | AGCCCATT | + | 11675802 | 11675809 | -243 | -236 | |||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||