Summary of Gene (J043024M17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J043024M17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 11675817 | -228 |
TSS clone peak | A | clone | + | 11675904 | -141 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCTCTCT | + | 11675836 | 11675843 | -209 | -202 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCGTCCACGTGTCC | + | 11675688 | 11675703 | -357 | -342 | |||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG434 | CCACGTGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG509 | CACGTGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG451 | ACGTGTCC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CGTTGGAT | + | 11675735 | 11675742 | -310 | -303 | |||
OsREG481 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | AGCCCATT | + | 11675802 | 11675809 | -243 | -236 | |||
OsREG432 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |