PlantPromoterDB promoter information of J053031J16
Summary of Gene (J053031J16)
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Overview
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Focused view (chromosome 2: 3828679-3829878)
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Genome position
from initiation codon AK058912 AK100893 J023055I08 J023130P09 J023139G13 J043016H16 J053027E10 J053061A22 J053088J02 J053093E17 J065028L08 J065038K06 J065060G19 J075037P13 J075083I01 J075100H24 J080034E20 J080044E22 J080077F17 J080078P05 J090007E12 J100019B20 J100025H05 J100042K10 J100045B13 J100045C10 J100050L07 TSS from cDNA TSS information J053031J16 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J053031J16
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 3827875 | -154 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGCCCACCA | + | 3827776 | 3827784 | -253 | -245 | |||
| OsREG462 | AGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||