PlantPromoterDB promoter information of J053066A04
Summary of Gene (J053066A04)
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Overview
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Focused view (chromosome 7: 30056851-30058050)
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Genome position
from initiation codon AK060763 AK072158 AK101012 J013001D13 J013022D09 J013028C24 J013032M14 J013097J18 J013104C10 J013131J23 J023097E13 J023106G01 J023123J16 J023148P17 J065019D18 J065095A22 J090010D23 TSS from cDNA TSS information J053066A04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J053066A04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | C | clone | + | 30057503 | AK060763 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATATGGGCTGT | + | 30057415 | 30057425 | AK060763 | ||||
| OsREG480 | ATATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG465 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | ATGGGCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG435 | TGGGCTGT | PPDB Motif | GCCCA | PLACE Motif | |||||