Summary of Gene (J065006P11)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-114-H06 AK062194 AK063019 AK120629 J013045E23 J013153D21 J013157A14 J023048M04 J065080D15 J065096M02 J065109M14 J065207L21 J075028D22 J075040O12 J075051O03 J075071M13 J075151H15 J075153D16 J075153I21 J080311L16 J090039J19 J100053A20 J100071P19 TSS from cDNA TSS information J065006P11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 29678164 | -32 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTCGGCCCAGC | + | 29678028 | 29678038 | -168 | -158 | |||
OsREG575 | CTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |