PlantPromoterDB promoter information of J065006P11
Summary of Gene (J065006P11)
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Overview
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Focused view (chromosome 1: 29679146-29680345)
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Genome position
from initiation codon 009-114-H06 AK062194 AK063019 AK120629 J013045E23 J013153D21 J013157A14 J023048M04 J065080D15 J065096M02 J065109M14 J065207L21 J075028D22 J075040O12 J075051O03 J075071M13 J075151H15 J075153D16 J075153I21 J080311L16 J090039J19 J100053A20 J100071P19 TSS from cDNA TSS information J065006P11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065006P11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 29678164 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTCGGCCCAGC | + | 29678028 | 29678038 | -168 | -158 | |||
| OsREG575 | CTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG565 | CGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG620 | GGCCCAGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||