PlantPromoterDB promoter information of J065007I23
Summary of Gene (J065007I23)
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Overview
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Focused view (chromosome 7: 14314211-14313012)
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Genome position
from initiation codon TSS from cDNA TSS information J065007I23 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065007I23
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 14315999 | -88 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATACAC | - | 14316023 | 14316030 | -112 | -119 |
| Y Patch | CCTCTCTT | - | 14315964 | 14315971 | -53 | -60 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCGGCCCATAT | - | 14316041 | 14316052 | -130 | -141 | |||
| OsREG615 | GCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | CCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG630 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG480 | GCCCATAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGGGCCGAA | - | 14316056 | 14316066 | -145 | -155 | |||
| OsREG628 | GGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | GTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCCACA | - | 14316277 | 14316284 | -366 | -373 | |||
| OsREG611 | GCCCCACA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||