PlantPromoterDB promoter information of J065017J02
Summary of Gene (J065017J02)
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Overview
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Focused view (chromosome 3: 11570874-11572073)
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Genome position
from initiation codon TSS from cDNA TSS information J065017J02 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065017J02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 11573339 | -135 |
| TSS clone peak | A | clone | + | 11573343 | -131 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGGGTATAAAGG | + | 11573304 | 11573315 | -170 | -159 |
| Y Patch | TCTTCCCC | + | 11573381 | 11573388 | -93 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCGCGTCGCG | + | 11573045 | 11573055 | -429 | -419 | |||
| OsREG583 | GTCGCGTC | PPDB Motif | PLACE Motif | ||||||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | ACGCGTCC | + | 11573097 | 11573104 | -377 | -370 | |||
| OsREG442 | ACGCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGGGGG | + | 11573240 | 11573247 | -234 | -227 | |||
| OsREG537 | CGCGGGGG | PPDB Motif | PLACE Motif | ||||||
| REG | GAGGCGTGGA | + | 11573262 | 11573271 | -212 | -203 | |||
| OsREG503 | GAGGCGTG | PPDB Motif | PLACE Motif | ||||||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
| REG | AACGGGCCGGT | + | 11573278 | 11573288 | -196 | -186 | |||
| OsREG424 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | |||||
| OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||