PlantPromoterDB promoter information of J065017J02
Summary of Gene (J065017J02)
|
Overview
|
Focused view (chromosome 3: 11574224-11575423)
|
Genome position
from initiation codon 006-022-H12 009-052-C12 009-141-C11 009-187-E02 AF042840 AK059756 AK070090 J065008M05 J065019B18 J065027O09 J065028G17 J065045N09 J065078F21 J065091H01 J065112B19 J065119K17 J065127M19 J065186E08 J065199G12 J075030K07 J075050B02 J075057G07 J075070F01 J075093N12 J075095K13 J075102D14 J075103B17 J075114K05 J075142F18 J075154L11 J075185F08 J090012A14 J090020E22 J090044L10 J100044C12 J100088J19 TSS from cDNA TSS information J065017J02 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
|
|
Promoter Summary of J065017J02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 11573339 | -135 |
| TSS clone peak | A | clone | + | 11573343 | -131 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGGGTATAAAGG | + | 11573304 | 11573315 | -170 | -159 |
| Y Patch | TCTTCCCC | + | 11573381 | 11573388 | -93 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCGCGTCGCG | + | 11573045 | 11573055 | -429 | -419 | |||
| OsREG583 | GTCGCGTC | PPDB Motif | PLACE Motif | ||||||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | ACGCGTCC | + | 11573097 | 11573104 | -377 | -370 | |||
| OsREG442 | ACGCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGGGGG | + | 11573240 | 11573247 | -234 | -227 | |||
| OsREG537 | CGCGGGGG | PPDB Motif | PLACE Motif | ||||||
| REG | GAGGCGTGGA | + | 11573262 | 11573271 | -212 | -203 | |||
| OsREG503 | GAGGCGTG | PPDB Motif | PLACE Motif | ||||||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
| REG | AACGGGCCGGT | + | 11573278 | 11573288 | -196 | -186 | |||
| OsREG424 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | |||||
| OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||