Summary of Gene (J065022N01)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK100065 AK103195 AY224478 J013160O05 J023030C05 J033025O04 J033121P15 J043034I23 J065022N02 J065023M01 J065101G13 J075058P13 J075186K10 J075199F17 TSS from cDNA TSS information J065022N01 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 15413930 | -804 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCCTCTCTCTCTCCTC | + | 15413917 | 15413933 | -817 | -801 |
Y Patch | TCTCTCTCT | + | 15413937 | 15413945 | -797 | -789 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCGGGCCCCACG | + | 15413652 | 15413664 | -1082 | -1070 | |||
OsREG441 | ACCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG543 | CCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCACGCG | + | 15413696 | 15413703 | -1038 | -1031 | |||
OsREG530 | CCCACGCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCGTGCGGTG | + | 15413768 | 15413778 | -966 | -956 | |||
OsREG555 | CGCGTGCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG500 | GTGCGGTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCGGCCCGGGCCCACCC | + | 15413793 | 15413810 | -941 | -924 | |||
OsREG615 | GCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG539 | GGCCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG543 | CCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG600 | GCCCACCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCGGCCCCACCTGTCAG | + | 15413813 | 15413830 | -921 | -904 | |||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG514 | CCCACCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG436 | CCACCTGT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG501 | CACCTGTC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG551 | CCTGTCAG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | GTGGCCCAGG | + | 15413839 | 15413848 | -895 | -886 | |||
OsREG653 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG578 | TGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG550 | GGCCCAGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |