Summary of Gene (J065025C04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J065127F24 J090023P12 TSS from cDNA TSS information J065025C04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 18990361 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCACCGCAC | + | 18990124 | 18990133 | -270 | -261 | |||
OsREG554 | CGCACCGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG500 | CACCGCAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCGCGAC | + | 18990147 | 18990154 | -247 | -240 | |||
OsREG557 | CGCGCGAC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | GGTCCACGCC | + | 18990178 | 18990187 | -216 | -207 | |||
OsREG570 | GGTCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGGCCCGCGTGCG | + | 18990240 | 18990253 | -154 | -141 | |||
OsREG567 | GGGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG619 | GGGCCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG555 | CGCGTGCG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |