PlantPromoterDB promoter information of J065025C04
Summary of Gene (J065025C04)
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Overview
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Focused view (chromosome 2: 18989094-18990293)
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Genome position
from initiation codon J065127F24 J090023P12 TSS from cDNA TSS information J065025C04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065025C04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 18990361 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCACCGCAC | + | 18990124 | 18990133 | -270 | -261 | |||
| OsREG554 | CGCACCGC | PPDB Motif | PLACE Motif | ||||||
| OsREG500 | CACCGCAC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGCGAC | + | 18990147 | 18990154 | -247 | -240 | |||
| OsREG557 | CGCGCGAC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | GGTCCACGCC | + | 18990178 | 18990187 | -216 | -207 | |||
| OsREG570 | GGTCCACG | PPDB Motif | PLACE Motif | ||||||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GGGGCCCGCGTGCG | + | 18990240 | 18990253 | -154 | -141 | |||
| OsREG567 | GGGGCCCG | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG619 | GGGCCCGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG555 | CGCGTGCG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||