Summary of Gene (J065036F08)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J053029J05 J053054B07 J053069A12 J065024G23 J065066M11 J065143G19 J090014D11 J090071C17 TSS from cDNA TSS information J065036F08 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 10375688 | -49 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTCCTCCTCC | + | 10375643 | 10375654 | -94 | -83 |
Y Patch | TCCTCTCC | + | 10375659 | 10375666 | -78 | -71 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTGTGGC | + | 10375466 | 10375473 | -271 | -264 | |||
OsREG573 | CGTGTGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGTGGGCCAGA | + | 10375501 | 10375511 | -236 | -226 | |||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTGGCCCATATAAGGCCCAACT | + | 10375540 | 10375561 | -197 | -176 | |||
OsREG660 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG480 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG479 | GCCCAACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAAGCCCACGAA | + | 10375587 | 10375599 | -150 | -138 | |||
OsREG419 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG463 | AGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG601 | GCCCACGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG529 | CCCACGAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |