PlantPromoterDB promoter information of J065037F07

Summary of Gene (J065037F07)

Organism	Oryza sativa
Chromosome	4
Locus	Os04g0665700 NCBI
Gene model	J065037F07
Description	NONE

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Overview

Focused view (chromosome 4: 34380498-34381697)

`Genome position from initiation codon` 013-084-D06 AK121951 J013020L20 J033034K12 J033107K04 J065014E01 J065044C03 J065103I10 J065106P15 J065142G06 J075061O20 J075091P11 J075095A18 J075117C22 J075166B22 J075198L04 J080068D08 J090032K13 J090045E22 TSS from cDNA TSS information J065037F07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of J065037F07

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 34381515 AK121951, J013020L20, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J065106P15, J033034K12, J065103I10, AK121951, J033107K04, J090045E22, 013-084-D06, J065044C03, J090032K13

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	34381515	AK121951, J013020L20, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J065106P15, J033034K12, J065103I10, AK121951, J033107K04, J090045E22, 013-084-D06, J065044C03, J090032K13

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCCTCTCTCTC + 34381486 34381499 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22

Y Patch CCCCTTCC + 34381535 34381542 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCCTCTCTCTC`	+	34381486	34381499	013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22
Y Patch	`CCCCTTCC`	+	34381535	34381542	013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGCCCAAAGCCCAAG + 34381361 34381377 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22

OsREG653 GTGGCCCA          PPDB Motif GCCCA PLACE Motif

OsREG659 TGGCCCAA         PPDB Motif GCCCA PLACE Motif

OsREG625   GGCCCAAA        PPDB Motif GCCCA PLACE Motif

OsREG421        AAAGCCCA   PPDB Motif GCCCA PLACE Motif

OsREG426         AAGCCCAA PPDB Motif GCCCA PLACE Motif

OsREG459          AGCCCAAG PPDB Motif GCCCA PLACE Motif

REG GAGGCCCAAAGCCCAACT + 34381439 34381456 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22

OsREG587 GAGGCCCA           PPDB Motif GCCCA PLACE Motif

OsREG471 AGGCCCAA          PPDB Motif GCCCA PLACE Motif

OsREG625   GGCCCAAA         PPDB Motif GCCCA PLACE Motif

OsREG421        AAAGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG426         AAGCCCAA   PPDB Motif GCCCA PLACE Motif

OsREG458          AGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif

OsREG479           GCCCAACT PPDB Motif GCCCA PLACE Motif