Summary of Gene (J065037F07)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK121951 J013020L20 J033034K12 J033107K04 J065014E01 J065044C03 J065103I10 J065106P15 J065142G06 J075061O20 J075091P11 J075095A18 J075117C22 J075166B22 J075198L04 J080068D08 J090032K13 J090045E22 TSS from cDNA TSS information J065037F07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 34381515 | AK121951, J013020L20, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J065106P15, J033034K12, J065103I10, AK121951, J033107K04, J090045E22, 013-084-D06, J065044C03, J090032K13 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCCTCTCTCTC | + | 34381486 | 34381499 | 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22 | |
Y Patch | CCCCTTCC | + | 34381535 | 34381542 | 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTGGCCCAAAGCCCAAG | + | 34381361 | 34381377 | 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22 | ||||
OsREG653 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG459 | AGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGGCCCAAAGCCCAACT | + | 34381439 | 34381456 | 013-084-D06, AK121951, J013020L20, J033034K12, J033107K04, J065044C03, J065103I10, J065106P15, J075061O20, J075091P11, J075095A18, J075117C22, J075166B22, J075198L04, J090032K13, J090045E22 | ||||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG458 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG479 | GCCCAACT | PPDB Motif | GCCCA  | PLACE Motif |   |