PlantPromoterDB promoter information of J065038N11
Summary of Gene (J065038N11)
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Overview
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Focused view (chromosome 4: 212119-210920)
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Genome position
from initiation codon AK060850 AK066032 J013093J06 J013120B15 J023010J08 J033023L03 J033025N21 J033026M14 J033046J22 J033052H11 J033058P05 J033064A11 J033067K11 J033076H02 J033094E04 J033106A02 J033108N14 J033114I06 J033118H18 J033148C05 J043010I24 J053025M02 J053026N08 J053027O14 J065219C03 J090011F14 J090027C03 J090067M19 J090069C17 J090075N11 J090095C22 TSS from cDNA TSS information J065038N11 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065038N11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 213394 | -625 |
| TSS clone peak | C | clone | - | 213357 | -588 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCTCC | - | 213352 | 213361 | -583 | -592 |
| Y Patch | TCTTCCTCTT | - | 213378 | 213387 | -609 | -618 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCGAA | - | 213444 | 213455 | -675 | -686 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CAAGGCCCACA | - | 213464 | 213474 | -695 | -705 | |||
| OsREG497 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG430 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG472 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCGCGCGC | - | 213557 | 213564 | -788 | -795 | |||
| OsREG617 | TCGCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||